{ "_id": "6a1f1e34b401979e7341fdb9", "Package": "spind", "Title": "Spatial Methods and Indices", "Version": "2.2.1", "Author": "Gudrun Carl [cre, aut], Ingolf Kuehn [aut], Sam Levin [aut]", "Maintainer": "Sam Levin ", "URL": "https://github.com/levisc8/spind", "BugReports": "https://github.com/levisc8/spind/issues", "Description": "Functions for spatial methods based on generalized\nestimating equations (GEE) and wavelet-revised methods (WRM),\nfunctions for scaling by wavelet multiresolution regression\n(WMRR), conducting multi-model inference, and stepwise model\nselection. Further, contains functions for spatially corrected\nmodel accuracy measures.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://levisc8.r-universe.dev", "Date/Publication": "2024-03-28 22:36:40 UTC", "RemoteUrl": "https://github.com/levisc8/spind", "RemoteRef": "HEAD", "RemoteSha": "427df394b4ea348ae07b6372958b2f05c327e9dd", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 08:26:53 UTC", "User": "root" }, "MD5sum": "0aa2fa91ce9b62476f645717e0e99f2a", "_user": "levisc8", "_type": "src", "_file": "spind_2.2.1.tar.gz", "_fileid": "c7acebac1f1c8386c7bf505d0eeacc9a9daf830d321715054e4686f5a4be471f", "_filesize": 689984, "_sha256": "c7acebac1f1c8386c7bf505d0eeacc9a9daf830d321715054e4686f5a4be471f", "_created": "2026-05-16T08:26:53.000Z", "_published": "2026-06-02T18:17:24.555Z", "_distro": "noble", "_jobs": [ { "job": 79141184668, "time": 171, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7031957338" }, { "job": 79141185118, "time": 163, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7031956754" }, { "job": 79141185190, "time": 170, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7031955213" }, { "job": 79141184897, "time": 241, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7031955836" }, { "job": 79141184300, "time": 218, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7031942315" }, { "job": 79141184212, "time": 122, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7366208341" }, { "job": 79141184832, "time": 107, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7031951741" }, { "job": 79141185217, "time": 116, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7031952401" }, { "job": 79141184682, "time": 117, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7031952769" } ], "_buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/levisc8/spind", "_commit": { "id": "427df394b4ea348ae07b6372958b2f05c327e9dd", "author": "Sam Levin ", "committer": "GitHub ", "message": "Update README.md", "time": 1711665400 }, "_maintainer": { "name": "Sam Levin", "email": "levisc8@gmail.com", "login": "levisc8", "twitter": "@SamLevin5", "uuid": 25177425 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "gee", "version": ">= 4.13.19", "role": "Imports" }, { "package": "geepack", "version": ">= 1.2.1", "role": "Imports" }, { "package": "MASS", "version": ">= 7.3.49", "role": "Imports" }, { "package": "splancs", "version": ">= 2.1.40", "role": "Imports" }, { "package": "lattice", "version": ">= 0.20.35", "role": "Imports" }, { "package": "waveslim", "version": ">= 1.7.5", "role": "Imports" }, { "package": "rje", "version": ">= 1.9", "role": "Imports" }, { "package": "stringr", "version": ">= 1.3.1", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.0.0", "role": "Imports" }, { "package": "RColorBrewer", "version": ">= 1.1.2", "role": "Imports" }, { "package": "rlang", "version": ">= 0.2.1", "role": "Imports" }, { "package": "knitr", "version": ">= 1.15.1", "role": "Suggests" }, { "package": "rmarkdown", "version": ">= 1.9", "role": "Suggests" }, { "package": "gridExtra", "version": ">= 2.3", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.0.0", "role": "Suggests" }, { "package": "PresenceAbsence", "version": ">= 1.1.9", "role": "Suggests" }, { "package": "sp", "version": ">= 1.2.7", "role": "Suggests" }, { "package": "covr", "version": ">= 3.1.0", "role": "Suggests" } ], "_owner": "levisc8", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "models", "r-spatial", "spatial" ], "_stars": 3, "_contributors": [ { "user": "levisc8", "count": 401, "uuid": 25177425 } ], "_userbio": { "uuid": 25177425, "type": "user", "name": "Sam Levin", "description": "PhD student in the Knight Lab @ Uni-Halle + iDiv. Member of SalGo Team @ Oxford. " }, "_downloads": { "count": 315, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spind" }, "_mentions": 1, "_devurl": "https://github.com/levisc8/spind", "_searchresults": 45, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/spind.html", "manual.pdf" ], "_homeurl": "https://github.com/levisc8/spind", "_realowner": "levisc8", "_cranurl": true, "_releases": [ { "version": "2.0.0", "date": "2017-04-04" }, { "version": "2.0.1", "date": "2017-04-07" }, { "version": "2.1.0", "date": "2017-06-24" }, { "version": "2.1.1", "date": "2017-09-03" }, { "version": "2.1.2", "date": "2018-01-04" }, { "version": "2.1.3", "date": "2018-04-08" }, { "version": "2.2.0", "date": "2018-07-20" }, { "version": "2.2.1", "date": "2020-10-30" } ], "_exports": [ "acfft", "adjusted.actuals", "aic.calc", "covar.plot", "GEE", "mmiGEE", "mmiWMRR", "qic.calc", "rvi.plot", "scaleWMRR", "step.spind", "th.dep", "th.indep", "upscale", "wavecovar", "wavevar", "WRM" ], "_datasets": [ { "name": "carlinadata", "title": "Carlina data set", "object": "carlinadata", "class": [ "data.frame" ], "fields": [ "carlina.horrida", "aridity", "land.use", "x", "y" ], "rows": 961, "table": true, "tojson": true }, { "name": "hook", "title": "Hook data set", "object": "hook", "class": [ "data.frame" ], "fields": [ "actuals", "predictions", "x", "y" ], "rows": 100, "table": true, "tojson": true }, { "name": "musdata", "title": "Mus musculus data set", "object": "musdata", "class": [ "data.frame" ], "fields": [ "musculus", "pollution", "exposure", "x", "y" ], "rows": 400, "table": true, "tojson": true } ], "_help": [ { "page": "acfft", "title": "Spatial autocorrelation diagnostics", "topics": [ "acfft" ] }, { "page": "adjusted.actuals", "title": "Adjusted actual values", "topics": [ "adjusted.actuals" ] }, { "page": "aic.calc", "title": "Akaike Information Criterion with correction for sample size", "topics": [ "aic.calc" ] }, { "page": "carlinadata", "title": "Carlina data set", "topics": [ "carlinadata" ] }, { "page": "covar.plot", "title": "Plot wavelet variance/covariance", "topics": [ "covar.plot" ] }, { "page": "GEE", "title": "GEE (Generalized Estimating Equations)", "topics": [ "GEE", "plot.GEE", "predict.GEE", "summary.GEE" ] }, { "page": "hook", "title": "Hook data set", "topics": [ "hook" ] }, { "page": "mmiGEE", "title": "Multi-model inference for GEE models", "topics": [ "mmiGEE" ] }, { "page": "mmiWMRR", "title": "Multi-model inference for wavelet multiresolution regression", "topics": [ "mmiWMRR" ] }, { "page": "musdata", "title": "Mus musculus data set", "topics": [ "musdata" ] }, { "page": "qic.calc", "title": "Quasi-Information Criterion for Generalized Estimating Equations", "topics": [ "qic.calc" ] }, { "page": "rvi.plot", "title": "Relative Variable Importance", "topics": [ "rvi.plot" ] }, { "page": "scaleWMRR", "title": "Scaling by wavelet multiresolution regression (WMRR)", "topics": [ "scaleWMRR" ] }, { "page": "spind", "title": "spind: Spatial Methods and Indices", "topics": [ "spind" ] }, { "page": "step.spind", "title": "Stepwise model selection for GEEs and WRMs", "topics": [ "step.spind" ] }, { "page": "th.dep", "title": "Spatial threshold-dependent accuracy measures", "topics": [ "th.dep" ] }, { "page": "th.indep", "title": "Spatial threshold-independent accuracy measures", "topics": [ "th.indep" ] }, { "page": "upscale", "title": "Upscaling of smooth components", "topics": [ "upscale" ] }, { "page": "wavecovar", "title": "Wavelet covariance analysis", "topics": [ "wavecovar" ] }, { "page": "wavevar", "title": "Wavelet variance analysis", "topics": [ "wavevar" ] }, { "page": "WRM", "title": "Wavelet-revised models (WRMs)", "topics": [ "plot.WRM", "predict.WRM", "summary.WRM", "WRM" ] } ], "_readme": "https://github.com/levisc8/spind/raw/HEAD/README.md", "_rundeps": [ "backports", "broom", "cli", "cpp11", "dplyr", "farver", "gee", "geepack", "generics", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "multitaper", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "rje", "rlang", "S7", "scales", "sp", "splancs", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "waveslim", "withr" ], "_vignettes": [ { "source": "spind_vignette.Rmd", "filename": "spind_vignette.html", "title": "Intro to spind", "author": "Sam Levin, Gudrun Carl, Ingolf Kuehn", "engine": "knitr::rmarkdown", "headings": [ "Generalized Estimating Equations (GEEs) for species distribution modeling [^1]", "Wavelet Revised Models (WRMs) [^6]", "Other features specific to WRMs", "Multi-model inference with GEEs and WRMs", "Goodness of fit and model performance", "Wrapping up" ], "created": "2017-03-11 15:50:22", "modified": "2020-10-30 13:47:44", "commits": 28 } ], "_score": 4.829303772831025, "_indexed": true, "_nocasepkg": "spind", "_universes": [ "levisc8" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.2.1", "date": "2026-05-16T08:29:17.000Z", "distro": "noble", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "91de5740d32d75530dbb8b775be879c2c57c48bc2e8c0626841bdd673fd6d503", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.6.0", "os": "linux", "version": "2.2.1", "date": "2026-05-16T08:29:13.000Z", "distro": "noble", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "06709b905bd69fbdc96a7820e5231cdaf46c1550b816392ba80685a808d019e5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.5.3", "os": "mac", "version": "2.2.1", "date": "2026-05-16T08:29:08.000Z", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "c3b048e0688b94d201ad114fc9ab08ba434c48ceb6ac274a3aaf644f69cb941a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.6.0", "os": "mac", "version": "2.2.1", "date": "2026-05-16T08:29:08.000Z", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "5c5708b90917891db36ed5f3ed705a6049b0be07c147d716795723f2d27a5ceb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.7.0", "os": "win", "version": "2.2.1", "date": "2026-05-16T08:28:09.000Z", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "4ef6676790f9ebccddd698ad49ab3aaa24f6b8241e7a4855596d4e2792fd6e91", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.5.3", "os": "win", "version": "2.2.1", "date": "2026-05-16T08:28:16.000Z", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "201d20e5eb5ae15bfe7c9dfad96e530c413178de1fbb81e5a7b9e91b11075b31", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.6.0", "os": "win", "version": "2.2.1", "date": "2026-05-16T08:28:28.000Z", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "05aa439813f91d7f5b22fc57e43fadcfa16936985f03e02c0216a1dee9619ff2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" }, { "r": "4.6.0", "os": "wasm", "version": "2.2.1", "date": "2026-06-02T18:17:03.000Z", "commit": "427df394b4ea348ae07b6372958b2f05c327e9dd", "fileid": "9299f52ce257a37d0038a89faed23325a9f65802e962c125102b9773c88ddd62", "status": "success", "buildurl": "https://github.com/r-universe/levisc8/actions/runs/25957229770" } ] }